STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMLHETrimethyllysine dioxygenase, mitochondrial. (427 aa)    
Predicted Functional Partners:
AIFM2
Apoptosis-inducing factor 2.
      
 0.905
CDKAL1
Threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1.
      
 0.885
CEP57
Centrosomal protein of 57 kDa isoform X1.
      
 0.695
PTPN13
Tyrosine-protein phosphatase non-receptor type 13 isoform X1.
      
 0.683
DENND10
Protein FAM45A isoform X1.
   
  
 0.662
LOC110088549
L-lactate dehydrogenase A chain.
   
 
 0.661
SPRY3
Protein sprouty homolog 3.
      
 0.653
KRT8
Keratin, type II cytoskeletal 8 isoform X1.
    
 
 0.650
APBB1IP
Amyloid beta A4 precursor protein-binding family B member 1-interacting protein isoform X1.
      
 0.620
SLC25A43
Solute carrier family 25, member 43.
      
 0.619
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.