RANBP9 protein (Pogona vitticeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RANBP9

Ran-binding protein 9/10. (909 aa)

Predicted Functional Partners:

WDR26

0.979

GID8

0.966

RMND5A

0.941

RMND5B

0.930

ARMC8

0.923

MAEA

0.919

GID4

0.908

YPEL5

0.883

ENSPVIP00000010637

0.851

MKLN1

0.851

Your Current Organism:

Pogona vitticeps

NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARMC8	ENSPVIP00000010637	ENSPVIP00000029577	ENSPVIP00000010637	Armadillo repeat-containing protein 8 isoform X1.	annotation not available	0.920
ARMC8	GID4	ENSPVIP00000029577	ENSPVIP00000012177	Armadillo repeat-containing protein 8 isoform X1.	Glucose-induced degradation protein 4 homolog.	0.998
ARMC8	GID8	ENSPVIP00000029577	ENSPVIP00000006287	Armadillo repeat-containing protein 8 isoform X1.	Glucose-induced degradation protein 8 homolog.	0.986
ARMC8	MAEA	ENSPVIP00000029577	ENSPVIP00000010882	Armadillo repeat-containing protein 8 isoform X1.	Macrophage erythroblast attacher isoform X1.	0.997
ARMC8	MKLN1	ENSPVIP00000029577	ENSPVIP00000022578	Armadillo repeat-containing protein 8 isoform X1.	Muskelin isoform X1.	0.920
ARMC8	RANBP9	ENSPVIP00000029577	ENSPVIP00000006373	Armadillo repeat-containing protein 8 isoform X1.	Ran-binding protein 9/10.	0.923
ARMC8	RMND5A	ENSPVIP00000029577	ENSPVIP00000005491	Armadillo repeat-containing protein 8 isoform X1.	E3 ubiquitin-protein transferase RMND5.	0.992
ARMC8	RMND5B	ENSPVIP00000029577	ENSPVIP00000034164	Armadillo repeat-containing protein 8 isoform X1.	E3 ubiquitin-protein transferase RMND5.	0.993
ARMC8	WDR26	ENSPVIP00000029577	ENSPVIP00000018462	Armadillo repeat-containing protein 8 isoform X1.	WD repeat-containing protein 26.	0.994
ARMC8	YPEL5	ENSPVIP00000029577	ENSPVIP00000034994	Armadillo repeat-containing protein 8 isoform X1.	Protein yippee-like 5.	0.973
ENSPVIP00000010637	ARMC8	ENSPVIP00000010637	ENSPVIP00000029577	annotation not available	Armadillo repeat-containing protein 8 isoform X1.	0.920
ENSPVIP00000010637	GID4	ENSPVIP00000010637	ENSPVIP00000012177	annotation not available	Glucose-induced degradation protein 4 homolog.	0.816
ENSPVIP00000010637	GID8	ENSPVIP00000010637	ENSPVIP00000006287	annotation not available	Glucose-induced degradation protein 8 homolog.	0.959
ENSPVIP00000010637	MAEA	ENSPVIP00000010637	ENSPVIP00000010882	annotation not available	Macrophage erythroblast attacher isoform X1.	0.941
ENSPVIP00000010637	RANBP9	ENSPVIP00000010637	ENSPVIP00000006373	annotation not available	Ran-binding protein 9/10.	0.851
ENSPVIP00000010637	RMND5A	ENSPVIP00000010637	ENSPVIP00000005491	annotation not available	E3 ubiquitin-protein transferase RMND5.	0.932
ENSPVIP00000010637	RMND5B	ENSPVIP00000010637	ENSPVIP00000034164	annotation not available	E3 ubiquitin-protein transferase RMND5.	0.877
ENSPVIP00000010637	WDR26	ENSPVIP00000010637	ENSPVIP00000018462	annotation not available	WD repeat-containing protein 26.	0.916
ENSPVIP00000010637	YPEL5	ENSPVIP00000010637	ENSPVIP00000034994	annotation not available	Protein yippee-like 5.	0.527
GID4	ARMC8	ENSPVIP00000012177	ENSPVIP00000029577	Glucose-induced degradation protein 4 homolog.	Armadillo repeat-containing protein 8 isoform X1.	0.998