Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL8A2Collagen alpha-2(VIII) chain. (697 aa)    
Predicted Functional Partners:
COL5A1
Collagen type V/XI/XXIV/XXVII, alpha.
 
0.758
COL5A2
Collagen type V/XI/XXIV/XXVII, alpha.
 
 
 0.727
COL27A1
Collagen type V/XI/XXIV/XXVII, alpha.
 
   
 0.618
ENSPVIP00000002638
annotation not available
 
  
 0.522
SERPINH1
Serpin peptidase inhibitor, clade H, member 1.
   
 0.446
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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