STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VLDLRVery low-density lipoprotein receptor isoform X1. (891 aa)    
Predicted Functional Partners:
PCSK9
Proprotein convertase subtilisin/kexin type 9.
    
 0.910
APOB
LOW QUALITY PROTEIN: apolipoprotein B-100.
    
 0.895
DAB1
Disabled homolog 1 isoform X1.
    
 0.887
MYLIP
E3 ubiquitin-protein ligase MYLIP isoform X1.
    
 0.840
LDLRAP1
Low density lipoprotein receptor adapter protein 1 isoform X1.
    
 0.779
ENSPVIP00000010332
Reelin-like.
    
 0.728
ENSPVIP00000010333
annotation not available
    
 0.728
ENSPVIP00000033090
annotation not available
    
 0.728
RELN
Reelin.
    
 0.728
APOE
Apolipoprotein E.
    
 0.667
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.