Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDC1Syndecan 1. (326 aa)    
Predicted Functional Partners:
THBS1
Thrombospondin-1 isoform X1.
    
 0.970
HPSE
Heparanase.
     
 0.963
THBS2
Thrombospondin 2/3/4/5.
    
 0.952
FGF2
Fibroblast growth factor 2.
    
 0.951
SDC4
Syndecan 4.
  
  
0.950
SDC2
Syndecan-2 isoform X1.
  
0.908
THBS4
Thrombospondin 2/3/4/5.
    
 0.907
COMP
Cartilage oligomeric matrix protein isoform X1.
    
 0.907
THBS3
Thrombospondin 2/3/4/5.
    
 0.907
FN1
Fibronectin isoform X1.
     
 0.906
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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