STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX1ATP-dependent RNA helicase DDX1. (740 aa)    
Predicted Functional Partners:
RTCB
TRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase).
   
 0.991
FAM98B
Protein FAM98B.
   
 0.987
RTRAF
UPF0568 protein C14orf166 homolog.
   
 0.980
FAM98A
Protein FAM98A isoform X1.
   
 
 0.979
C2orf49
Ashwin.
    
 0.971
ATXN2
Ataxin-2 isoform X1.
    
 
 0.803
ZBTB8OS
Zinc finger and BTB domain containing 8 opposite strand.
     
 0.779
ANO10
Anoctamin-10.
    
   0.768
DHX9
ATP-dependent RNA helicase A isoform X1.
   
 0.762
DHX36
ATP-dependent RNA helicase DHX36.
   
 0.755
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.