Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LRATD1Protein FAM84A. (320 aa)    
Predicted Functional Partners:
ANKRD55
Ankyrin repeat domain-containing protein 55.
      
 0.823
XKR9
XK-related protein 9 isoform X1.
      
 0.806
DOP1B
Protein dopey-2.
      
 0.695
KIAA0355
Uncharacterized protein KIAA0355 homolog.
      
 0.694
AKAP10
A-kinase anchor protein 10, mitochondrial.
      
 0.603
RSAD1
Radical S-adenosyl methionine domain-containing protein 1, mitochondrial.
      
 0.573
ENSPVIP00000015858
Protein dopey-1-like.
      
 0.572
ENSPVIP00000015860
annotation not available
      
 0.572
SCAF4
Splicing factor, arginine/serine-rich 15 isoform X1.
      
 0.566
ENSPVIP00000004444
annotation not available
      
 0.565
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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