STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM39RNA-binding protein 39 isoform X1. (533 aa)    
Predicted Functional Partners:
DDX5
Probable ATP-dependent RNA helicase DDX5 isoform X1.
   
 0.968
RBM25
RNA-binding protein 25 isoform X1.
   
 0.964
SON
Protein SON isoform X1.
   
  0.957
PRPF40A
Pre-mRNA-processing factor 40 homolog A.
   
 0.954
ENSPVIP00000024664
annotation not available
   
 0.932
SF1
LOW QUALITY PROTEIN: splicing factor 1.
   
 0.921
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 
 0.917
SAP18
Histone deacetylase complex subunit SAP18.
   
 0.910
CDC40
Pre-mRNA-processing factor 17.
    
 0.867
EIF4A3
Eukaryotic initiation factor 4A-III.
   
  0.861
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.