Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LAMB1Laminin subunit beta-1. (1806 aa)    
Predicted Functional Partners:
LAMC2
Laminin subunit gamma-2.
   
 0.919
CD44
CD44 antigen isoform X1.
     
 0.914
ENSPVIP00000020657
annotation not available
   
 0.908
LAMC3
Laminin subunit gamma-3.
   
 0.908
ITGA5
Integrin subunit alpha 5.
    
 0.860
ITGA1
Integrin alpha 1.
    
 0.809
ITGAV
Integrin alpha V.
    
 0.795
ITGA11
Integrin alpha 11.
    
 0.785
ITGA2
Integrin alpha 2.
    
 0.785
ITGA10
Integrin subunit alpha 10.
    
 0.785
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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