SMARCAD1 protein (Pogona vitticeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

SMARCAD1

annotation not available (1059 aa)

Predicted Functional Partners:

MSH2

0.952

EXO1

0.867

TRIM33

0.762

ENSPVIP00000002641

0.762

TRIM28

0.762

TP53BP1

0.755

RECQL4

0.728

BLM

0.728

WRN

0.712

SUPT16H

0.710

Your Current Organism:

Pogona vitticeps

NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BLM	EXO1	ENSPVIP00000012309	ENSPVIP00000030740	Bloom syndrome protein-like.	Exonuclease 1 isoform X1.	0.991
BLM	MSH2	ENSPVIP00000012309	ENSPVIP00000004137	Bloom syndrome protein-like.	DNA mismatch repair protein MSH2.	0.896
BLM	SMARCAD1	ENSPVIP00000012309	ENSPVIP00000006815	Bloom syndrome protein-like.	annotation not available	0.728
BLM	TP53BP1	ENSPVIP00000012309	ENSPVIP00000034700	Bloom syndrome protein-like.	Tumor suppressor p53-binding protein 1.	0.939
BLM	WRN	ENSPVIP00000012309	ENSPVIP00000009035	Bloom syndrome protein-like.	Werner syndrome ATP-dependent helicase isoform X1.	0.589
ENSPVIP00000002641	SMARCAD1	ENSPVIP00000002641	ENSPVIP00000006815	annotation not available	annotation not available	0.762
ENSPVIP00000002641	TP53BP1	ENSPVIP00000002641	ENSPVIP00000034700	annotation not available	Tumor suppressor p53-binding protein 1.	0.592
ENSPVIP00000002641	TRIM33	ENSPVIP00000002641	ENSPVIP00000002640	annotation not available	E3 ubiquitin-protein ligase TRIM33.	0.899
EXO1	BLM	ENSPVIP00000030740	ENSPVIP00000012309	Exonuclease 1 isoform X1.	Bloom syndrome protein-like.	0.991
EXO1	MSH2	ENSPVIP00000030740	ENSPVIP00000004137	Exonuclease 1 isoform X1.	DNA mismatch repair protein MSH2.	0.993
EXO1	RECQL4	ENSPVIP00000030740	ENSPVIP00000009949	Exonuclease 1 isoform X1.	RecQ like helicase 4.	0.964
EXO1	SMARCAD1	ENSPVIP00000030740	ENSPVIP00000006815	Exonuclease 1 isoform X1.	annotation not available	0.867
EXO1	TP53BP1	ENSPVIP00000030740	ENSPVIP00000034700	Exonuclease 1 isoform X1.	Tumor suppressor p53-binding protein 1.	0.896
EXO1	WRN	ENSPVIP00000030740	ENSPVIP00000009035	Exonuclease 1 isoform X1.	Werner syndrome ATP-dependent helicase isoform X1.	0.983
MSH2	BLM	ENSPVIP00000004137	ENSPVIP00000012309	DNA mismatch repair protein MSH2.	Bloom syndrome protein-like.	0.896
MSH2	EXO1	ENSPVIP00000004137	ENSPVIP00000030740	DNA mismatch repair protein MSH2.	Exonuclease 1 isoform X1.	0.993
MSH2	RECQL4	ENSPVIP00000004137	ENSPVIP00000009949	DNA mismatch repair protein MSH2.	RecQ like helicase 4.	0.813
MSH2	SMARCAD1	ENSPVIP00000004137	ENSPVIP00000006815	DNA mismatch repair protein MSH2.	annotation not available	0.952
MSH2	WRN	ENSPVIP00000004137	ENSPVIP00000009035	DNA mismatch repair protein MSH2.	Werner syndrome ATP-dependent helicase isoform X1.	0.845
RECQL4	EXO1	ENSPVIP00000009949	ENSPVIP00000030740	RecQ like helicase 4.	Exonuclease 1 isoform X1.	0.964