STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP42Ubiquitin carboxyl-terminal hydrolase 36/42. (1297 aa)    
Predicted Functional Partners:
SUDS3
Sin3 histone deacetylase corepressor complex component SDS3.
    
 0.708
RCE1
Ras converting CAAX endopeptidase 1.
     
 0.654
TP53
Cellular tumor antigen p53.
    
  0.574
IFIH1
Interferon-induced helicase C domain-containing protein 1 isoform X1.
     
 0.550
FAU
Ubiquitin-like protein fubi and ribosomal protein S30.
    
 0.528
UBE2W
Ubiquitin-conjugating enzyme E2 W isoform X1.
    
 
 0.457
DHX58
Probable ATP-dependent RNA helicase DHX58.
     
 0.437
BRMS1L
Breast cancer metastasis-suppressor 1-like protein isoform X1.
    
  0.434
BRMS1
Breast cancer metastasis-suppressor 1 and related proteins.
    
  0.434
LAMP1
Lysosome-associated membrane glycoprotein 1.
      
 0.425
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.