STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRRTM1Leucine-rich repeat transmembrane neuronal protein 1/2. (522 aa)    
Predicted Functional Partners:
CLSTN3
Calsyntenin 3.
   
  
 0.905
KCNS3
Potassium voltage-gated channel delayed-rectifier subfamily S member 3.
   
 
 0.679
TRAPPC10
Trafficking protein particle complex subunit 10.
      
 0.675
KCNG3
Potassium voltage-gated channel subfamily G member 3 isoform X1.
    
 
 0.646
CBLN1
Cerebellin-1.
   
 0.638
RAB12
Ras-related protein Rab-12.
    
  0.631
NXPH1
Neurexophilin-1.
   
  
 0.627
ARHGAP26
Rho GTPase-activating protein 26 isoform X1.
      
 0.620
NRXN3-2
Neurexin 3.
   
 0.600
NRXN3
Neurexin 3 isoform X1.
   
 0.600
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.