RCOR2 protein (Pogona vitticeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RCOR2

REST corepressor 2. (506 aa)

Predicted Functional Partners:

ARID4B

0.960

ARID4A

0.959

KDM1A

0.923

HMG20B

0.820

PHF21A

0.809

KDM1B

0.785

REST

0.776

MAOA

0.765

LOC110074070

0.765

HDAC2

0.655

Your Current Organism:

Pogona vitticeps

NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ARID4B	ENSPVIP00000009552	ENSPVIP00000024279	AT-rich interactive domain-containing protein 4A isoform X1.	AT-rich interactive domain-containing protein 4B isoform X1.	0.664
ARID4A	HDAC2	ENSPVIP00000009552	ENSPVIP00000011997	AT-rich interactive domain-containing protein 4A isoform X1.	Histone deacetylase 2 isoform X1.	0.986
ARID4A	HMG20B	ENSPVIP00000009552	ENSPVIP00000033077	AT-rich interactive domain-containing protein 4A isoform X1.	High mobility group 20B.	0.519
ARID4A	KDM1A	ENSPVIP00000009552	ENSPVIP00000008941	AT-rich interactive domain-containing protein 4A isoform X1.	[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase.	0.707
ARID4A	KDM1B	ENSPVIP00000009552	ENSPVIP00000003480	AT-rich interactive domain-containing protein 4A isoform X1.	Lysine-specific histone demethylase 1B isoform X1.	0.707
ARID4A	LOC110074070	ENSPVIP00000009552	ENSPVIP00000026849	AT-rich interactive domain-containing protein 4A isoform X1.	Amine oxidase [flavin-containing] B-like.	0.707
ARID4A	MAOA	ENSPVIP00000009552	ENSPVIP00000026841	AT-rich interactive domain-containing protein 4A isoform X1.	Amine oxidase [flavin-containing] A-like.	0.707
ARID4A	PHF21A	ENSPVIP00000009552	ENSPVIP00000017830	AT-rich interactive domain-containing protein 4A isoform X1.	PHD finger protein 21A isoform X1.	0.743
ARID4A	RCOR2	ENSPVIP00000009552	ENSPVIP00000007288	AT-rich interactive domain-containing protein 4A isoform X1.	REST corepressor 2.	0.959
ARID4B	ARID4A	ENSPVIP00000024279	ENSPVIP00000009552	AT-rich interactive domain-containing protein 4B isoform X1.	AT-rich interactive domain-containing protein 4A isoform X1.	0.664
ARID4B	HDAC2	ENSPVIP00000024279	ENSPVIP00000011997	AT-rich interactive domain-containing protein 4B isoform X1.	Histone deacetylase 2 isoform X1.	0.986
ARID4B	HMG20B	ENSPVIP00000024279	ENSPVIP00000033077	AT-rich interactive domain-containing protein 4B isoform X1.	High mobility group 20B.	0.609
ARID4B	KDM1A	ENSPVIP00000024279	ENSPVIP00000008941	AT-rich interactive domain-containing protein 4B isoform X1.	[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase.	0.707
ARID4B	KDM1B	ENSPVIP00000024279	ENSPVIP00000003480	AT-rich interactive domain-containing protein 4B isoform X1.	Lysine-specific histone demethylase 1B isoform X1.	0.707
ARID4B	LOC110074070	ENSPVIP00000024279	ENSPVIP00000026849	AT-rich interactive domain-containing protein 4B isoform X1.	Amine oxidase [flavin-containing] B-like.	0.707
ARID4B	MAOA	ENSPVIP00000024279	ENSPVIP00000026841	AT-rich interactive domain-containing protein 4B isoform X1.	Amine oxidase [flavin-containing] A-like.	0.707
ARID4B	PHF21A	ENSPVIP00000024279	ENSPVIP00000017830	AT-rich interactive domain-containing protein 4B isoform X1.	PHD finger protein 21A isoform X1.	0.743
ARID4B	RCOR2	ENSPVIP00000024279	ENSPVIP00000007288	AT-rich interactive domain-containing protein 4B isoform X1.	REST corepressor 2.	0.960
ARID4B	REST	ENSPVIP00000024279	ENSPVIP00000019467	AT-rich interactive domain-containing protein 4B isoform X1.	RE1-silencing transcription factor.	0.587
HDAC2	ARID4A	ENSPVIP00000011997	ENSPVIP00000009552	Histone deacetylase 2 isoform X1.	AT-rich interactive domain-containing protein 4A isoform X1.	0.986