Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RTN3Reticulon-3 isoform X1. (914 aa)    
Predicted Functional Partners:
LINGO1
Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein.
   
 0.703
SNX15
Sorting nexin-15.
    
   0.641
ENSPVIP00000020740
annotation not available
    
 
 0.630
OMG
Oligodendrocyte myelin glycoprotein.
    
 0.629
ENSPVIP00000015452
annotation not available
     
  0.616
LINGO2
Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2.
   
 0.576
SEC63
Translocation protein SEC63 homolog.
    
 
 0.565
LOC110072479
Receptor expression-enhancing protein 6-like.
    
 
 0.553
ARL6IP5
PRA1 family protein 3.
   
 
 0.547
LNPK
Endoplasmic reticulum junction formation protein lunapark.
    
 
 0.542
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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