STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RLIME3 ubiquitin-protein ligase RLIM isoform X1. (600 aa)    
Predicted Functional Partners:
RPS27A
Ribosomal protein S27a.
    
 0.881
NEXMIF
Protein KIAA2022 homolog isoform X1.
 
    
 0.747
LDB1
LIM domain-binding protein 1 isoform X1.
    
 
 0.739
LDB2
LIM domain-binding protein 2 isoform X1.
    
 
 0.739
SMAD7
Mothers against decapentaplegic homolog 7.
    
 0.732
LOC110072527
Ubiquitin-large subunit ribosomal protein L40e.
    
 0.722
LOC110072526
Ubiquitin-large subunit ribosomal protein L40e.
    
 0.722
UBE2D2
Ubiquitin-conjugating enzyme E2 D2 isoform X1.
   
 0.689
UBE2D3
Ubiquitin-conjugating enzyme E2 D3.
   
 0.689
UBE2D1
Ubiquitin conjugating enzyme E2 D1.
   
 0.689
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.