STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SF1LOW QUALITY PROTEIN: splicing factor 1. (671 aa)    
Predicted Functional Partners:
U2AF2
Splicing factor U2AF 65 kDa subunit.
   
 
 0.981
SF3A2
Splicing factor 3A subunit 2.
   
 0.962
DDX17
Probable ATP-dependent RNA helicase DDX17.
   
 0.956
SNRPE
Small nuclear ribonucleoprotein E.
   
 
 0.943
DDX46
Probable ATP-dependent RNA helicase DDX46.
   
 0.941
SF3A1
Splicing factor 3A subunit 1 isoform X1.
   
 0.940
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 0.939
RBM17
Splicing factor 45 isoform X1.
   
 0.935
SF3A3
Splicing factor 3a subunit 3.
   
 0.924
RBM39
RNA-binding protein 39 isoform X1.
   
 0.921
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.