Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC88CProtein Daple isoform X1. (2050 aa)    
Predicted Functional Partners:
RND1
Rho-related GTP-binding protein Rho6.
     
 0.449
DYNC1H1
Cytoplasmic dynein 1 heavy chain 1 isoform X1.
    
 
 0.435
IFT122
Intraflagellar transport 122.
      
 0.433
TCF25
Transcription factor 25.
      
 0.428
MIER1
Mesoderm induction early response protein 1 isoform X1.
      
 0.424
CEP89
Centrosomal protein 89.
    
   0.404
DCTN1
Dynactin subunit 1.
    
   0.401
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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