LOC110085020 protein (Pogona vitticeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC110085020

Parapinopsin-like. (369 aa)

Predicted Functional Partners:

GNL3L

0.679

GNGT2

0.596

GNG11

0.582

CRYBA1

0.570

RGR

0.534

GNB5

0.528

GNG10

0.517

GNG5

0.513

GNG13

0.505

OPN1SW

0.502

Your Current Organism:

Pogona vitticeps

NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRYBA1	LOC110085020	ENSPVIP00000023219	ENSPVIP00000008028	Beta-crystallin A3 isoform X1.	Parapinopsin-like.	0.570
GNB5	GNG10	ENSPVIP00000034144	ENSPVIP00000020701	Guanine nucleotide-binding protein subunit beta-5.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10.	0.907
GNB5	GNG11	ENSPVIP00000034144	ENSPVIP00000017364	Guanine nucleotide-binding protein subunit beta-5.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11.	0.919
GNB5	GNG13	ENSPVIP00000034144	ENSPVIP00000023751	Guanine nucleotide-binding protein subunit beta-5.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13.	0.920
GNB5	GNG5	ENSPVIP00000034144	ENSPVIP00000025559	Guanine nucleotide-binding protein subunit beta-5.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5.	0.992
GNB5	GNGT2	ENSPVIP00000034144	ENSPVIP00000015231	Guanine nucleotide-binding protein subunit beta-5.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2.	0.898
GNB5	LOC110085020	ENSPVIP00000034144	ENSPVIP00000008028	Guanine nucleotide-binding protein subunit beta-5.	Parapinopsin-like.	0.528
GNB5	OPN1SW	ENSPVIP00000034144	ENSPVIP00000016209	Guanine nucleotide-binding protein subunit beta-5.	Short wavelength-sensitive opsin.	0.521
GNB5	RGR	ENSPVIP00000034144	ENSPVIP00000008407	Guanine nucleotide-binding protein subunit beta-5.	RPE-retinal G protein-coupled receptor isoform X1.	0.647
GNG10	GNB5	ENSPVIP00000020701	ENSPVIP00000034144	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10.	Guanine nucleotide-binding protein subunit beta-5.	0.907
GNG10	GNG11	ENSPVIP00000020701	ENSPVIP00000017364	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11.	0.943
GNG10	GNG13	ENSPVIP00000020701	ENSPVIP00000023751	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13.	0.926
GNG10	GNG5	ENSPVIP00000020701	ENSPVIP00000025559	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5.	0.895
GNG10	GNGT2	ENSPVIP00000020701	ENSPVIP00000015231	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2.	0.897
GNG10	LOC110085020	ENSPVIP00000020701	ENSPVIP00000008028	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10.	Parapinopsin-like.	0.517
GNG10	OPN1SW	ENSPVIP00000020701	ENSPVIP00000016209	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10.	Short wavelength-sensitive opsin.	0.502
GNG10	RGR	ENSPVIP00000020701	ENSPVIP00000008407	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10.	RPE-retinal G protein-coupled receptor isoform X1.	0.737
GNG11	GNB5	ENSPVIP00000017364	ENSPVIP00000034144	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11.	Guanine nucleotide-binding protein subunit beta-5.	0.919
GNG11	GNG10	ENSPVIP00000017364	ENSPVIP00000020701	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10.	0.943
GNG11	GNG13	ENSPVIP00000017364	ENSPVIP00000023751	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11.	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13.	0.915