STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOX7Transcription factor SOX7/8/10/18 (SOX group E/F). (374 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta-1 isoform X1.
    
 0.698
GATA6
Transcription factor GATA-6 isoform X1.
    
 0.653
LOC110070984
POU domain, class 5, transcription factor 1-like isoform X1.
    
 0.635
ENSPVIP00000008298
annotation not available
    
 
 0.528
LEF1
Lymphoid enhancer binding factor 1.
    
0.527
JUP
Junction plakoglobin isoform X1.
    
 0.523
TCF7
Transcription factor 7 isoform X1.
    
0.491
LOC110077941
Homeobox protein NANOG-like.
    
 0.466
CDH5
Cadherin 5, type 2, VE-cadherin.
   
  
 0.418
TRIP12
E3 ubiquitin-protein ligase TRIP12.
    
 
 0.416
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.