Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SHOXShort stature homeobox protein isoform X1. (309 aa)    
Predicted Functional Partners:
PRDM16
PR domain zinc finger protein 16-like.
    
 
 0.619
FOXB2
Forkhead box protein B2.
   
  
 0.601
SOX5
Transcription factor SOX5/6/13 (SOX group D).
    
 
 0.592
BANP
Protein BANP isoform X1.
      
 0.553
PKNOX1
Homeobox protein PKNOX1 isoform X1.
    
 
 0.529
TBX18
T-box transcription factor TBX18.
   
 0.487
TBX15
T-box transcription factor TBX15 isoform X1.
   
 0.487
OTP
LOW QUALITY PROTEIN: homeobox protein orthopedia.
   
  
 0.480
GHITM
Growth hormone-inducible transmembrane protein.
      
 0.479
WWTR1
WW domain-containing transcription regulator protein 1.
      
 0.444
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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