Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRP54Signal recognition particle 54 kDa protein. (504 aa)    
Predicted Functional Partners:
SRP19
Signal recognition particle 19 kDa protein isoform X1.
   
 0.999
SRP9
Signal recognition particle 9.
   
 0.999
SRP72
Signal recognition particle subunit SRP72.
   
 0.999
SRP68
Signal recognition particle subunit SRP68 isoform X1.
   
 0.999
BMF
Bcl-2-modifying factor isoform X1.
    
 0.989
SRPRA
Signal recognition particle receptor subunit alpha.
  
 0.949
SRPRB
Signal recognition particle receptor subunit beta.
   
 
 0.932
SEC63
Translocation protein SEC63 homolog.
   
  
 0.902
RPL23A
Large subunit ribosomal protein L23Ae.
  
 
 0.900
RPL11
60S ribosomal protein L11 isoform X1.
  
 
 0.827
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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