STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG5Protein SMG5. (1048 aa)    
Predicted Functional Partners:
UPF1
Regulator of nonsense transcripts 1 isoform X1.
   
 0.984
SMG7
LOW QUALITY PROTEIN: protein SMG7.
   
0.973
SMG6
LOW QUALITY PROTEIN: telomerase-binding protein EST1A.
   
0.970
TERT
Telomerase reverse transcriptase.
   
 0.967
NOP10
H/ACA ribonucleoprotein complex subunit 3.
     
 0.899
ENSPVIP00000030718
annotation not available
    
 0.898
TEP1
Telomerase protein component 1 isoform X1.
    
 0.898
ZGRF1
Zinc finger GRF-type containing 1.
   
 0.895
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
   
 0.885
UPF3A
Regulator of nonsense transcripts 3A isoform X1.
   
 0.885
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.