STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPUSD3RNA pseudouridylate synthase domain-containing protein 3 isoform X1. (363 aa)    
Predicted Functional Partners:
FASTKD2
FAST kinase domain-containing protein 2, mitochondrial.
   
 0.786
TRUB2
Probable tRNA pseudouridine synthase 2 isoform X1.
  
 0.768
DDX28
Probable ATP-dependent RNA helicase DDX28.
   
 
 0.755
MRM3
16S rRNA (guanosine(1370)-2'-O)-methyltransferase.
  
 
 0.679
MTERF3
Transcription termination factor 3, mitochondrial isoform X1.
   
 0.677
PUS7
Pseudouridylate synthase 7 homolog isoform X1.
   
 
 0.668
LOC110071735
Pseudouridylate synthase 7 homolog-like protein.
   
 
 0.665
RCC1L
RCC1-like G exchanging factor-like protein.
    
 0.664
MALSU1
Mitochondrial assembly of ribosomal large subunit protein 1.
  
 
 0.655
GTPBP3
TRNA modification GTPase GTPBP3, mitochondrial isoform X1.
  
 
 0.599
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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