Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
L3HYPDHTrans-3-hydroxy-L-proline dehydratase. (374 aa)    
Predicted Functional Partners:
DAO
D-amino-acid oxidase.
  
 
 0.929
CRYM
Thiomorpholine-carboxylate dehydrogenase.
 
  
 0.877
TMEM109
Transmembrane protein 109.
    
 0.649
ENSPVIP00000003298
60 kDa lysophospholipase-like.
    
 0.649
CCNE2
G1/S-specific cyclin-E1.
    
   0.625
ENSPVIP00000000780
annotation not available
    
 0.623
LOC110071583
Pyrroline-5-carboxylate reductase 3-like.
    
 0.623
ENSPVIP00000009978
annotation not available
    
 0.623
GALM
Aldose 1-epimerase.
      
 0.593
HYKK
Hydroxylysine kinase.
   
  
 0.587
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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