STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF38BPre-mRNA-splicing factor 38B. (634 aa)    
Predicted Functional Partners:
PRPF38A
Pre-mRNA-splicing factor 38A.
     
 
0.900
UBC
Polyubiquitin-C.
    
   0.763
PNN
Pinin.
   
    0.674
RBM25
RNA-binding protein 25 isoform X1.
   
  
 0.628
LUC7L3
Luc7-like protein 3 isoform X1.
   
 
 0.625
ENSPVIP00000024664
annotation not available
   
  
 0.574
SLC66A2
PQ-loop repeat-containing protein 1 isoform X1.
      
 0.567
SCOC
Short coiled-coil protein.
      
 0.565
ENSPVIP00000005098
annotation not available
      
 0.562
ATP6V1D
V-type H+-transporting ATPase subunit D.
      
 0.560
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.