Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KDM1A[histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase. (788 aa)    
Predicted Functional Partners:
RCOR1
REST corepressor 1.
   
 0.999
PHF21A
PHD finger protein 21A isoform X1.
    
 0.997
HMG20B
High mobility group 20B.
   
 0.997
HMG20A
High mobility group protein 20A isoform X1.
   
 0.979
ZNF217
Zinc finger protein 217.
    
 0.978
AR
Androgen receptor-like.
    
 0.962
HDAC3
Histone deacetylase 3 isoform X1.
   
 0.960
REST
RE1-silencing transcription factor.
    
 0.957
ZMYM2
Zinc finger MYM-type protein 2 isoform X1.
   
 0.950
TP53
Cellular tumor antigen p53.
    
 0.950
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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