STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBOX5U-box domain-containing protein 5. (569 aa)    
Predicted Functional Partners:
TRIP12
E3 ubiquitin-protein ligase TRIP12.
   
 0.926
WDSUB1
WD repeat, SAM and U-box domain-containing protein 1 isoform X1.
      
 0.901
UBE2U
Ubiquitin-conjugating enzyme E2 U isoform X1.
    
 0.897
ZNF367
Zinc finger protein 367.
      
 0.854
SMYD1
Histone-lysine N-methyltransferase SMYD1 isoform X1.
   
  
 0.827
FABP1
Fatty acid-binding protein 1, liver.
      
 0.787
UBE2Z
Ubiquitin-conjugating enzyme E2 Z.
   
 0.758
MRPS27
28S ribosomal protein S27, mitochondrial.
      
 0.723
YOD1
Ubiquitin thioesterase OTU1 isoform X1.
    
 
 0.722
RNF24
RING finger protein 24.
     
 0.709
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.