STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGM4Protein-glutamine gamma-glutamyltransferase 4. (691 aa)    
Predicted Functional Partners:
F13B
Coagulation factor XIII B chain isoform X1.
    
 0.882
F2
Coagulation factor II (thrombin).
     
 0.666
SERPINE2
Glia-derived nexin.
     
 0.558
ZDHHC3
Palmitoyltransferase ZDHHC3 isoform X1.
      
 0.556
FGA
Fibrinogen alpha chain.
   
 0.555
SERPIND1
Heparin cofactor II.
     
 0.554
EVPL
Envoplakin.
     
 0.545
PPL
LOW QUALITY PROTEIN: periplakin.
     
 0.545
PROC
Vitamin K-dependent protein C.
     
 0.539
USH2A
LOW QUALITY PROTEIN: usherin.
     
 0.488
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.