THSD4 protein (Pogona vitticeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

THSD4

Thrombospondin type-1 domain-containing protein 4. (1028 aa)

Predicted Functional Partners:

B3GLCT

0.506

FBN1

0.497

POFUT2

0.461

ANKS3

0.429

SPON1

0.404

Your Current Organism:

Pogona vitticeps

NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKS3	THSD4	ENSPVIP00000014825	ENSPVIP00000009258	Ankyrin repeat and sterile alpha motif domain containing 3.	Thrombospondin type-1 domain-containing protein 4.	0.429
B3GLCT	POFUT2	ENSPVIP00000028269	ENSPVIP00000017021	UDP-glucose:O-linked fucose beta-1,3-glucosyltransferase.	GDP-fucose protein O-fucosyltransferase 2 isoform X1.	0.705
B3GLCT	SPON1	ENSPVIP00000028269	ENSPVIP00000021786	UDP-glucose:O-linked fucose beta-1,3-glucosyltransferase.	Spondin-1.	0.798
B3GLCT	THSD4	ENSPVIP00000028269	ENSPVIP00000009258	UDP-glucose:O-linked fucose beta-1,3-glucosyltransferase.	Thrombospondin type-1 domain-containing protein 4.	0.506
FBN1	THSD4	ENSPVIP00000034037	ENSPVIP00000009258	Fibrillin-1 isoform X1.	Thrombospondin type-1 domain-containing protein 4.	0.497
POFUT2	B3GLCT	ENSPVIP00000017021	ENSPVIP00000028269	GDP-fucose protein O-fucosyltransferase 2 isoform X1.	UDP-glucose:O-linked fucose beta-1,3-glucosyltransferase.	0.705
POFUT2	SPON1	ENSPVIP00000017021	ENSPVIP00000021786	GDP-fucose protein O-fucosyltransferase 2 isoform X1.	Spondin-1.	0.762
POFUT2	THSD4	ENSPVIP00000017021	ENSPVIP00000009258	GDP-fucose protein O-fucosyltransferase 2 isoform X1.	Thrombospondin type-1 domain-containing protein 4.	0.461
SPON1	B3GLCT	ENSPVIP00000021786	ENSPVIP00000028269	Spondin-1.	UDP-glucose:O-linked fucose beta-1,3-glucosyltransferase.	0.798
SPON1	POFUT2	ENSPVIP00000021786	ENSPVIP00000017021	Spondin-1.	GDP-fucose protein O-fucosyltransferase 2 isoform X1.	0.762
SPON1	THSD4	ENSPVIP00000021786	ENSPVIP00000009258	Spondin-1.	Thrombospondin type-1 domain-containing protein 4.	0.404
THSD4	ANKS3	ENSPVIP00000009258	ENSPVIP00000014825	Thrombospondin type-1 domain-containing protein 4.	Ankyrin repeat and sterile alpha motif domain containing 3.	0.429
THSD4	B3GLCT	ENSPVIP00000009258	ENSPVIP00000028269	Thrombospondin type-1 domain-containing protein 4.	UDP-glucose:O-linked fucose beta-1,3-glucosyltransferase.	0.506
THSD4	FBN1	ENSPVIP00000009258	ENSPVIP00000034037	Thrombospondin type-1 domain-containing protein 4.	Fibrillin-1 isoform X1.	0.497
THSD4	POFUT2	ENSPVIP00000009258	ENSPVIP00000017021	Thrombospondin type-1 domain-containing protein 4.	GDP-fucose protein O-fucosyltransferase 2 isoform X1.	0.461
THSD4	SPON1	ENSPVIP00000009258	ENSPVIP00000021786	Thrombospondin type-1 domain-containing protein 4.	Spondin-1.	0.404