Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SHISA4Protein shisa-4. (231 aa)    
Predicted Functional Partners:
PRRG2
Transmembrane gamma-carboxyglutamic acid protein 2.
      
 0.867
TCAIM
T-cell activation inhibitor, mitochondrial isoform X1.
      
 0.660
LRRC40
Leucine-rich repeat-containing protein 40.
      
 0.657
SMIM12
Small integral membrane protein 12 isoform X1.
      
 0.655
IPO4
Importin-4.
   
 
 0.653
TBP
Transcription initiation factor TFIID TATA-box-binding protein.
    
 
 0.646
TBPL2
Transcription initiation factor TFIID TATA-box-binding protein.
    
 
 0.646
IPO8
Importin-8 isoform X1.
   
 
 0.624
IPO7
Importin-7 isoform X1.
   
 
 0.624
BEND7
BEN domain-containing protein 7 isoform X1.
      
 0.622
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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