STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF4E3 ubiquitin-protein ligase MARCH4/9/11. (411 aa)    
Predicted Functional Partners:
CNOT2
CCR4-NOT transcription complex subunit 2 isoform X1.
    
 0.598
UBE2QL1
Ubiquitin-conjugating enzyme E2Q-like protein 1.
      
 0.596
RRP15
RRP15-like protein.
      
 0.561
UBE2G2
Ubiquitin-conjugating enzyme E2 G2.
    
 0.523
GPATCH2
G patch domain-containing protein 2 isoform X1.
      
 0.517
FAF1
FAS-associated factor 1 isoform X1.
    
 0.512
FAF2
FAS-associated factor 2 isoform X1.
    
 0.512
SPATA17
Spermatogenesis-associated protein 17 isoform X1.
    
 
 0.453
OGFOD1
2-oxoglutarate and iron dependent oxygenase domain containing 1.
      
 0.447
HERPUD2
HERPUD family member 2.
      
 0.424
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.