STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XRCC5X-ray repair cross-complementing protein 5. (761 aa)    
Predicted Functional Partners:
XRCC6
X-ray repair cross-complementing protein 6 isoform X1.
   
 0.999
WRN
Werner syndrome ATP-dependent helicase isoform X1.
    
 
 0.997
LIG4
DNA ligase 4 isoform X1.
   
 0.997
PRKDC
LOW QUALITY PROTEIN: DNA-dependent protein kinase catalytic subunit.
   
 0.997
DCLRE1C
DNA cross-link repair 1C protein.
    
 0.989
MRE11
Double-strand break repair protein MRE11.
   
 0.982
APLF
Aprataxin and PNK-like factor isoform X1.
    
 
 0.967
XRCC1
DNA repair protein XRCC1 isoform X1.
     
 0.958
MSH2
DNA mismatch repair protein MSH2.
   
 0.957
BRCA1
Breast cancer type 1 susceptibility protein.
    
 0.956
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.