Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GPATCH4G patch domain-containing protein 4 isoform X1. (302 aa)    
Predicted Functional Partners:
MAK16
Protein MAK16 homolog isoform X1.
   
   0.959
DDX56
Probable ATP-dependent RNA helicase DDX56.
   
   0.928
FTSJ3
LOW QUALITY PROTEIN: pre-rRNA processing protein FTSJ3.
   
   0.905
PUM3
Pumilio homology domain family member 6.
   
   0.893
SURF6
Surfeit locus protein 6.
   
   0.890
RRP8
Ribosomal RNA processing 8.
   
   0.886
MYBBP1A
Myb-binding protein 1A.
   
 
 0.884
EBNA1BP2
Probable rRNA-processing protein EBP2.
   
   0.884
DDX27
Probable ATP-dependent RNA helicase DDX27.
   
   0.876
RPF2
Ribosome production factor 2 homolog isoform X1.
   
 
 0.857
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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