STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRIF1Ligand-dependent nuclear receptor-interacting factor 1. (749 aa)    
Predicted Functional Partners:
CBX3
Chromobox protein homolog 3 isoform X1.
    
 
 0.887
SMCHD1
Structural maintenance of chromosomes flexible hinge domain-containing protein 1.
    
 
 0.799
CNOT10
CCR4-NOT transcription complex subunit 10 isoform X1.
      
 0.647
SDAD1
Protein SDA1 homolog.
      
 0.631
CBX5
Chromobox protein homolog 5 isoform X1.
    
 
 0.630
CBX1
Chromobox protein homolog 1.
    
 
 0.630
SRBD1
S1 RNA-binding domain-containing protein 1.
      
 0.624
PRR14
Proline-rich protein 14 isoform X1.
    
 
 0.623
ZNF451
E3 SUMO-protein ligase ZNF451.
      
 0.619
RRP15
RRP15-like protein.
      
 0.617
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.