STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMF1TATA element modulatory factor. (1164 aa)    
Predicted Functional Partners:
GCC1
GRIP and coiled-coil domain-containing protein 1.
     
 0.742
ENSPVIP00000014724
annotation not available
     
 0.730
VPS52
VPS52 subunit of GARP complex.
     
 0.728
VPS54
Vacuolar protein sorting-associated protein 54 isoform X1.
   
 
 0.725
VPS51
LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 51 homolog.
     
 0.717
COG7
Conserved oligomeric Golgi complex subunit 7.
     
 0.715
VPS53
Vacuolar protein sorting-associated protein 53 homolog.
     
 0.709
COG3
Conserved oligomeric Golgi complex subunit 3.
   
 
 0.706
COG1
Conserved oligomeric Golgi complex subunit 1.
     
 0.705
COG5
Conserved oligomeric Golgi complex subunit 5.
     
 0.704
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.