STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMF1TATA element modulatory factor. (1164 aa)    
Predicted Functional Partners:
GCC1
GRIP and coiled-coil domain-containing protein 1.
     
 0.880
ARFRP1
ADP-ribosylation factor related protein 1.
     
 0.855
VPS51
LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 51 homolog.
     
 0.831
VPS53
Vacuolar protein sorting-associated protein 53 homolog.
     
 0.831
VPS52
VPS52 subunit of GARP complex.
     
 0.830
ATP5ME
F-type H+-transporting ATPase subunit e.
    
   0.768
ENSPVIP00000019850
annotation not available
     
 0.754
SYS1
Protein SYS1 homolog.
     
 0.754
CENPW
Centromere protein W.
      
 0.695
TRIP12
E3 ubiquitin-protein ligase TRIP12.
      
 0.695
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.