RBM27 protein (Pogona vitticeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RBM27

RNA-binding protein 27 isoform X1. (1008 aa)

Predicted Functional Partners:

ZFC3H1

0.811

MTREX

0.678

PABPN1L

0.628

LOC110087838

0.628

SRRT

0.584

RNPS1

0.574

PCF11

0.548

DELE1

0.517

YTHDF1

0.514

SKIV2L

0.501

Your Current Organism:

Pogona vitticeps

NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DELE1	RBM27	ENSPVIP00000019676	ENSPVIP00000009837	Death ligand signal enhancer.	RNA-binding protein 27 isoform X1.	0.517
LOC110087838	MTREX	ENSPVIP00000019157	ENSPVIP00000013326	Polyadenylate-binding protein 2-like.	Superkiller viralicidic activity 2-like 2.	0.500
LOC110087838	PABPN1L	ENSPVIP00000019157	ENSPVIP00000015401	Polyadenylate-binding protein 2-like.	Embryonic polyadenylate-binding protein 2.	0.903
LOC110087838	PCF11	ENSPVIP00000019157	ENSPVIP00000009326	Polyadenylate-binding protein 2-like.	Pre-mRNA cleavage complex 2 protein Pcf11.	0.786
LOC110087838	RBM27	ENSPVIP00000019157	ENSPVIP00000009837	Polyadenylate-binding protein 2-like.	RNA-binding protein 27 isoform X1.	0.628
LOC110087838	YTHDF1	ENSPVIP00000019157	ENSPVIP00000032336	Polyadenylate-binding protein 2-like.	YTH domain-containing family protein 1.	0.412
LOC110087838	ZFC3H1	ENSPVIP00000019157	ENSPVIP00000009222	Polyadenylate-binding protein 2-like.	Zinc finger C3H1 domain-containing protein isoform X1.	0.735
MTREX	LOC110087838	ENSPVIP00000013326	ENSPVIP00000019157	Superkiller viralicidic activity 2-like 2.	Polyadenylate-binding protein 2-like.	0.500
MTREX	PABPN1L	ENSPVIP00000013326	ENSPVIP00000015401	Superkiller viralicidic activity 2-like 2.	Embryonic polyadenylate-binding protein 2.	0.500
MTREX	RBM27	ENSPVIP00000013326	ENSPVIP00000009837	Superkiller viralicidic activity 2-like 2.	RNA-binding protein 27 isoform X1.	0.678
MTREX	RNPS1	ENSPVIP00000013326	ENSPVIP00000025130	Superkiller viralicidic activity 2-like 2.	RNA-binding protein with serine-rich domain 1 isoform X1.	0.452
MTREX	SRRT	ENSPVIP00000013326	ENSPVIP00000014248	Superkiller viralicidic activity 2-like 2.	Serrate RNA effector molecule homolog isoform X1.	0.977
MTREX	YTHDF1	ENSPVIP00000013326	ENSPVIP00000032336	Superkiller viralicidic activity 2-like 2.	YTH domain-containing family protein 1.	0.406
MTREX	ZFC3H1	ENSPVIP00000013326	ENSPVIP00000009222	Superkiller viralicidic activity 2-like 2.	Zinc finger C3H1 domain-containing protein isoform X1.	0.996
PABPN1L	LOC110087838	ENSPVIP00000015401	ENSPVIP00000019157	Embryonic polyadenylate-binding protein 2.	Polyadenylate-binding protein 2-like.	0.903
PABPN1L	MTREX	ENSPVIP00000015401	ENSPVIP00000013326	Embryonic polyadenylate-binding protein 2.	Superkiller viralicidic activity 2-like 2.	0.500
PABPN1L	PCF11	ENSPVIP00000015401	ENSPVIP00000009326	Embryonic polyadenylate-binding protein 2.	Pre-mRNA cleavage complex 2 protein Pcf11.	0.786
PABPN1L	RBM27	ENSPVIP00000015401	ENSPVIP00000009837	Embryonic polyadenylate-binding protein 2.	RNA-binding protein 27 isoform X1.	0.628
PABPN1L	YTHDF1	ENSPVIP00000015401	ENSPVIP00000032336	Embryonic polyadenylate-binding protein 2.	YTH domain-containing family protein 1.	0.412
PABPN1L	ZFC3H1	ENSPVIP00000015401	ENSPVIP00000009222	Embryonic polyadenylate-binding protein 2.	Zinc finger C3H1 domain-containing protein isoform X1.	0.735