STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX39BATP-dependent RNA helicase UAP56/SUB2. (498 aa)    
Predicted Functional Partners:
ALYREF
THO complex subunit 4.
   
 0.998
THOC2
THO complex subunit 2.
   
 0.976
SARNP
SAP domain-containing ribonucleoprotein isoform X1.
   
 0.966
THOC1
THO complex subunit 1 isoform X1.
   
 0.938
EIF4A3
Eukaryotic initiation factor 4A-III.
  
0.934
THOC5
THO complex subunit 5 homolog isoform X1.
   
 0.934
RBM8A
RNA-binding protein 8A.
   
 0.925
POLDIP3
Polymerase delta-interacting protein 3 isoform X1.
   
 0.922
THOC6
THO complex subunit 6 homolog isoform X1.
   
 0.914
THOC3
THO complex 3.
    
 0.904
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.