Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APOMApolipoprotein M. (184 aa)    
Predicted Functional Partners:
LOC110071310
Apolipoprotein A-IV-like isoform X1.
   
 
 0.770
APOB
LOW QUALITY PROTEIN: apolipoprotein B-100.
   
 
 0.716
CETP
Cholesteryl ester transfer protein.
     
 0.653
APOA4
Apolipoprotein A-IV-like.
     
 0.646
APOE
Apolipoprotein E.
     
 0.636
APOA1
Apolipoprotein A-I.
   
 
 0.626
KLF7
Krueppel-like factor 6/7.
      
 0.567
GPANK1
G patch domain and ankyrin repeat-containing protein 1.
      
 0.544
TKFC
Triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing).
   
  
 0.510
TPRG1
Tumor protein p63-regulated gene 1 protein.
      
 0.504
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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