Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HERPUD2HERPUD family member 2. (409 aa)    
Predicted Functional Partners:
FAM8A1
Family with sequence similarity 8 member A1.
    
 
 0.692
RNF170
E3 ubiquitin-protein ligase RNF170 isoform X1.
      
 0.655
TMUB1
Transmembrane and ubiquitin-like domain-containing protein 1.
      
 0.630
TMUB2
Transmembrane and ubiquitin-like domain-containing protein 2.
      
 0.613
DNAJB9
DnaJ homolog subfamily B member 9 isoform X1.
   
  
 0.612
SYVN1
E3 ubiquitin-protein ligase synoviolin isoform X1.
   
 
 0.601
AMFR
Autocrine motility factor receptor.
   
 
 0.601
SEL1L
Protein sel-1 homolog 1.
    
 
 0.594
MARCHF4
E3 ubiquitin-protein ligase MARCH4/9/11.
      
 0.568
OGFOD1
2-oxoglutarate and iron dependent oxygenase domain containing 1.
      
 0.566
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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