STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABCF1ATP-binding cassette, subfamily F, member 1. (689 aa)    
Predicted Functional Partners:
RPL11
60S ribosomal protein L11 isoform X1.
   
 0.931
RPL8
Large subunit ribosomal protein L8e.
   
  0.872
RPS29
Small subunit ribosomal protein S29e.
   
  0.864
RPL18
Large subunit ribosomal protein L18e.
   
 0.842
RPS28
Small subunit ribosomal protein S28e.
    
 0.832
RPS23
Small subunit ribosomal protein S23e.
  
 0.825
LOC110077350
40S ribosomal protein S23.
  
 0.825
MRPL27
39S ribosomal protein L27, mitochondrial.
  
 
 0.818
ENSPVIP00000028682
annotation not available
   
 
 0.808
RPL23A
Large subunit ribosomal protein L23Ae.
   
 
 0.799
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.