STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000716755_02847Unannotated protein. (374 aa)    
Predicted Functional Partners:
GCA_000716755_02846
Unannotated protein.
       0.773
GCA_000716755_02848
Unannotated protein.
 
     0.747
GCA_000716755_08083
Unannotated protein.
 
     0.694
GCA_000716755_02849
Unannotated protein.
       0.691
GCA_000716755_07757
Unannotated protein.
  
     0.641
GCA_000716755_02844
Unannotated protein.
 
     0.621
GCA_000716755_02845
Unannotated protein.
       0.596
GCA_000716755_05163
Unannotated protein.
  
  
 0.515
GCA_000716755_08896
Unannotated protein.
  
     0.489
GCA_000716755_02307
Unannotated protein.
  
     0.483
Your Current Organism:
Saccharothrix syringae
NCBI taxonomy Id: 103733
Other names: ATCC 51364, DSM 43886, IFO 14523, INA 2240, JCM 6844, NBRC 14523, NRRL B-16468, Nocardiopsis syringae, S. syringae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.