STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000716755_06133Unannotated protein. (163 aa)    
Predicted Functional Partners:
GCA_000716755_06134
Unannotated protein.
       0.773
GCA_000716755_01668
Unannotated protein.
  
 
 0.719
RdgB
Unannotated protein.
  
  
 0.715
GCA_000716755_08449
Unannotated protein.
  
  
 0.715
GCA_000716755_00156
Unannotated protein.
    
 0.635
GCA_000716755_00235
Unannotated protein.
    
 0.635
GCA_000716755_01669
Unannotated protein.
    
 0.635
GCA_000716755_02881
Unannotated protein.
    
 0.635
GCA_000716755_03208
Unannotated protein.
    
 0.635
GCA_000716755_03967
Unannotated protein.
    
 0.635
Your Current Organism:
Saccharothrix syringae
NCBI taxonomy Id: 103733
Other names: ATCC 51364, DSM 43886, IFO 14523, INA 2240, JCM 6844, NBRC 14523, NRRL B-16468, Nocardiopsis syringae, S. syringae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.