STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000716755_06145Unannotated protein. (486 aa)    
Predicted Functional Partners:
GCA_000716755_02044
Unannotated protein.
 
    
0.926
GCA_000716755_02660
Unannotated protein.
   
 
 0.903
GCA_000716755_00712
Unannotated protein.
 
 
 0.800
GCA_000716755_01868
Unannotated protein.
  
     0.746
GCA_000716755_06144
Unannotated protein.
       0.536
SucD
Unannotated protein.
 
 
 0.440
IolB
Unannotated protein.
  
  
 0.430
GCA_000716755_02472
Unannotated protein.
 
 0.404
Your Current Organism:
Saccharothrix syringae
NCBI taxonomy Id: 103733
Other names: ATCC 51364, DSM 43886, IFO 14523, INA 2240, JCM 6844, NBRC 14523, NRRL B-16468, Nocardiopsis syringae, S. syringae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.