STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000716755_08442Unannotated protein. (282 aa)    
Predicted Functional Partners:
GCA_000716755_08443
Unannotated protein.
       0.563
GCA_000716755_01678
Unannotated protein.
   
 0.560
GCA_000716755_01687
Unannotated protein.
   
  0.536
GCA_000716755_01692
Unannotated protein.
   
  0.536
GCA_000716755_01682
Unannotated protein.
   
  0.532
GCA_000716755_01700
Unannotated protein.
   
  0.527
GCA_000716755_01689
Unannotated protein.
   
 0.523
GCA_000716755_05814
Unannotated protein.
   
  0.518
GCA_000716755_01697
Unannotated protein.
   
  0.516
GCA_000716755_01711
Unannotated protein.
   
  0.512
Your Current Organism:
Saccharothrix syringae
NCBI taxonomy Id: 103733
Other names: ATCC 51364, DSM 43886, IFO 14523, INA 2240, JCM 6844, NBRC 14523, NRRL B-16468, Nocardiopsis syringae, S. syringae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.