STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000716755_09134Unannotated protein. (421 aa)    
Predicted Functional Partners:
GCA_000716755_09133
Unannotated protein.
    0.974
GCA_000716755_09135
Unannotated protein.
 
  
 0.942
HutU
Unannotated protein.
 
  
 0.934
HutH
Unannotated protein.
 
  
 0.909
GCA_000716755_09129
Unannotated protein.
 
     0.624
GCA_000716755_09130
Unannotated protein.
       0.566
GCA_000716755_09128
Unannotated protein.
 
     0.543
GCA_000716755_03341
Unannotated protein.
 
  
 0.467
CmdF
Unannotated protein.
 
  
 0.446
Your Current Organism:
Saccharothrix syringae
NCBI taxonomy Id: 103733
Other names: ATCC 51364, DSM 43886, IFO 14523, INA 2240, JCM 6844, NBRC 14523, NRRL B-16468, Nocardiopsis syringae, S. syringae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.