STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK54156.1Hypothetical protein. (200 aa)    
Predicted Functional Partners:
SEK54119.1
ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein.
       0.601
SEL40973.1
2TM domain-containing protein.
  
     0.466
SEK54189.1
Hypothetical protein.
 
    
0.464
SEL40935.1
2TM domain-containing protein.
  
     0.439
SEK54078.1
Hypothetical protein.
       0.416
Your Current Organism:
Aquimarina amphilecti
NCBI taxonomy Id: 1038014
Other names: A. amphilecti, Aquimarina amphilecti Kennedy et al. 2014, Aquimarina sp. 92V, DSM 25232, NCIMB 14723, strain 92V
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.