SEL45312.1 protein (Aquimarina amphilecti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEL45312.1

AhpC/TSA family protein. (274 aa)

Predicted Functional Partners:

SEK25351.1

0.790

SEM08271.1

0.702

SEK79905.1

0.658

SEL35803.1

0.642

SEL85472.1

0.642

SEK38885.1

0.638

SEK39942.1

0.638

SEM13232.1

0.638

rpoB

0.630

SEK86910.1

0.628

Your Current Organism:

Aquimarina amphilecti

NCBI taxonomy Id: 1038014
Other names: A. amphilecti, Aquimarina amphilecti Kennedy et al. 2014, Aquimarina sp. 92V, DSM 25232, NCIMB 14723, strain 92V

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEK25351.1	SEK38885.1	SAMN04487910_0085	SAMN04487910_0410	Peroxiredoxin (alkyl hydroperoxide reductase subunit C).	NAD(P) transhydrogenase.	0.523
SEK25351.1	SEK39942.1	SAMN04487910_0085	SAMN04487910_0435	Peroxiredoxin (alkyl hydroperoxide reductase subunit C).	Dihydrolipoamide dehydrogenase.	0.523
SEK25351.1	SEL45312.1	SAMN04487910_0085	SAMN04487910_2500	Peroxiredoxin (alkyl hydroperoxide reductase subunit C).	AhpC/TSA family protein.	0.790
SEK25351.1	SEM13232.1	SAMN04487910_0085	SAMN04487910_4223	Peroxiredoxin (alkyl hydroperoxide reductase subunit C).	Dihydrolipoamide dehydrogenase.	0.523
SEK38885.1	SEK25351.1	SAMN04487910_0410	SAMN04487910_0085	NAD(P) transhydrogenase.	Peroxiredoxin (alkyl hydroperoxide reductase subunit C).	0.523
SEK38885.1	SEK39942.1	SAMN04487910_0410	SAMN04487910_0435	NAD(P) transhydrogenase.	Dihydrolipoamide dehydrogenase.	0.744
SEK38885.1	SEL45312.1	SAMN04487910_0410	SAMN04487910_2500	NAD(P) transhydrogenase.	AhpC/TSA family protein.	0.638
SEK39942.1	SEK25351.1	SAMN04487910_0435	SAMN04487910_0085	Dihydrolipoamide dehydrogenase.	Peroxiredoxin (alkyl hydroperoxide reductase subunit C).	0.523
SEK39942.1	SEK38885.1	SAMN04487910_0435	SAMN04487910_0410	Dihydrolipoamide dehydrogenase.	NAD(P) transhydrogenase.	0.744
SEK39942.1	SEL45312.1	SAMN04487910_0435	SAMN04487910_2500	Dihydrolipoamide dehydrogenase.	AhpC/TSA family protein.	0.638
SEK39942.1	SEM13232.1	SAMN04487910_0435	SAMN04487910_4223	Dihydrolipoamide dehydrogenase.	Dihydrolipoamide dehydrogenase.	0.844
SEK79905.1	SEK86910.1	SAMN04487910_1152	SAMN04487910_1343	Hypothetical protein.	Por secretion system C-terminal sorting domain-containing protein.	0.485
SEK79905.1	SEL45312.1	SAMN04487910_1152	SAMN04487910_2500	Hypothetical protein.	AhpC/TSA family protein.	0.658
SEK79905.1	SEM08271.1	SAMN04487910_1152	SAMN04487910_4094	Hypothetical protein.	Hypothetical protein.	0.416
SEK86910.1	SEK79905.1	SAMN04487910_1343	SAMN04487910_1152	Por secretion system C-terminal sorting domain-containing protein.	Hypothetical protein.	0.485
SEK86910.1	SEL45312.1	SAMN04487910_1343	SAMN04487910_2500	Por secretion system C-terminal sorting domain-containing protein.	AhpC/TSA family protein.	0.628
SEK86910.1	SEM08271.1	SAMN04487910_1343	SAMN04487910_4094	Por secretion system C-terminal sorting domain-containing protein.	Hypothetical protein.	0.519
SEL35803.1	SEL45312.1	SAMN04487910_2228	SAMN04487910_2500	Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.	AhpC/TSA family protein.	0.642
SEL35803.1	SEL85472.1	SAMN04487910_2228	SAMN04487910_3487	Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.	Peptidylprolyl isomerase.	0.898
SEL35803.1	SEM08271.1	SAMN04487910_2228	SAMN04487910_4094	Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.	Hypothetical protein.	0.494