STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APH01445.1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)    
Predicted Functional Partners:
APH01882.1
Trehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.935
APH00868.1
Alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.921
APH01895.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.921
APH02737.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.832
APH01446.1
Stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.815
nadE
NAD synthetase; Catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.663
APH01444.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.605
APH02765.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.424
APH03095.1
Shikimate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.401
Your Current Organism:
Janibacter terrae
NCBI taxonomy Id: 103817
Other names: ATCC BAA-130, CCUG 45369, CIP 107018, DSM 13876, DSM 13953 [[Janibacter brevis Imamura et al. 2000]], J. terrae, JCM 10705, JCM 12887 [[Janibacter brevis Imamura et al. 2000]], Janibacter brevis, Janibacter brevis Imamura et al. 2000, Janibacter terrae Yoon et al. 2000 emend. Lang et al. 2003, KCCM 80001, KCTC 19953, NBRC 107853, strain 10N [[Janibacter brevis Imamura et al. 2000]], strain CS12
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