STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APH01632.1ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)    
Predicted Functional Partners:
APH02172.1
Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.994
APH01633.1
CTP synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.984
APH03097.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.919
APH01681.1
Ribonuclease II; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.889
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
     
 0.850
APH00251.1
RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.823
APH00734.1
DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.823
APH00889.1
Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.823
APH03149.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.823
APH01635.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.821
Your Current Organism:
Janibacter terrae
NCBI taxonomy Id: 103817
Other names: ATCC BAA-130, CCUG 45369, CIP 107018, DSM 13876, DSM 13953 [[Janibacter brevis Imamura et al. 2000]], J. terrae, JCM 10705, JCM 12887 [[Janibacter brevis Imamura et al. 2000]], Janibacter brevis, Janibacter brevis Imamura et al. 2000, Janibacter terrae Yoon et al. 2000 emend. Lang et al. 2003, KCCM 80001, KCTC 19953, NBRC 107853, strain 10N [[Janibacter brevis Imamura et al. 2000]], strain CS12
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