STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potA_1Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily. (357 aa)    
Predicted Functional Partners:
cysW_1
Sulfate transport system permease protein CysW.
 
 
 0.991
potH_2
Putrescine transport system permease protein PotH.
 
 
 0.945
phnU
Putative 2-aminoethylphosphonate transport system permease protein PhnU.
 
 
 0.916
phnV_1
Putative 2-aminoethylphosphonate transport system permease protein PhnV.
 
 
 0.915
phnV_3
Putative 2-aminoethylphosphonate transport system permease protein PhnV.
 
 
 0.877
potH_4
Putrescine transport system permease protein PotH.
 
 
 0.869
AKQ53472.1
Bacterial extracellular solute-binding protein.
 
  
 0.864
potB_1
Spermidine/putrescine transport system permease protein PotB.
 
 0.715
phnV_2
Putative 2-aminoethylphosphonate transport system permease protein PhnV.
 
  
 0.701
potH_3
Putrescine transport system permease protein PotH.
 
 
 0.692
Your Current Organism:
Bordetella hinzii
NCBI taxonomy Id: 103855
Other names: ATCC 51783, B. hinzii, CCUG 33847, CIP 104527, DSM 11333, JCM 15550, LMG 13501, LMG:13501, NCTC 13199, strain TC58
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